[![Build Status](https://travis-ci.org/wang-q/App-Rangeops.svg?branch=master)](https://travis-ci.org/wang-q/App-Rangeops) [![Coverage Status](http://codecov.io/github/wang-q/App-Rangeops/coverage.svg?branch=master)](https://codecov.io/github/wang-q/App-Rangeops?branch=master) [![MetaCPAN Release](https://badge.fury.io/pl/App-Rangeops.svg)](https://metacpan.org/release/App-Rangeops) # NAME App::Rangeops - operates ranges and links of ranges on chromosomes # SYNOPSIS rangeops [-?h] [long options...] -? -h --help show help Available commands: commands: list the application's commands help: display a command's help screen circos: range links to circos links or highlight file clean: replace ranges within links, incorporate hit strands and remove nested links connect: connect bilaterial links into multilateral ones create: create blocked fasta files from range links filter: filter links by numbers of ranges or length difference merge: merge overlapped ranges via overlapping graph replace: replace ranges within links and incorporate hit strands sort: sort links and ranges within links See `rangeops commands` for usage information. # DESCRIPTION Types of links: - Bilateral links I(+):13063-17220 I(-):215091-219225 I(+):139501-141431 XII(+):95564-97485 - Bilateral links with hit strand I(+):13327-17227 I(+):215084-218967 - I(+):139501-141431 XII(+):95564-97485 + - Multilateral links II(+):186984-190356 IX(+):12652-16010 X(+):12635-15993 - Merge files aren't links I(-):13327-17227 I(+):13327-17227 Steps: sort | v clean -> merge | / | / v clean | V connect | v filter # AUTHOR Qiang Wang # COPYRIGHT AND LICENSE This software is copyright (c) 2016 by Qiang Wang. This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.